How to fix the issue with a Putty terminal where text is overlapping previous text (especially after resizing the terminal):
#Enter into the terminal
printf "\r\033[KAll Clear Now\n"
How to fix the issue with a Putty terminal where text is overlapping previous text (especially after resizing the terminal):
#Enter into the terminal
printf "\r\033[KAll Clear Now\n"
How to get rid of "WARNING : No mitochondrion chromosome found" in SnpEff:
Prefix the contig name with MT.
How to clone a public GitHub repository with VS Code and push it to a private GitHub repository.
Open a terminal in VS Code (View>terminal)
PS C:\Users\github> cd sarek
PS C:\Users\github\sarek> git remote remove origin
PS C:\Users\github\sarek> git remote add origin https://github.com/ink-blot/sarek.git
PS C:\Users\github\sarek> git branch
* master
PS C:\Users\github\sarek> git push -u origin master
If it doesn't promptly start pushing, an authorisation screen should (eventually) appear (it may take a few minutes).
The token method is preferred:
Optional steps if you want to fetch updates from the original nf-core/sarek repository in the future, add it as an upstream remote:
PS C:\Users\github\sarek> git remote add upstream https://github.com/nf-core/sarek.git
PS C:\Users\github\sarek> git fetch upstream
PS C:\Users\github\sarek> git merge upstream/main